MmuEX0029215 @ mm10
Exon Skipping
Gene
ENSMUSG00000026743 | Mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:MGI Symbol;Acc:MGI:1329038]
Coordinates
chr2:18159456-18170298:+
Coord C1 exon
chr2:18159456-18159711
Coord A exon
chr2:18162317-18162886
Coord C2 exon
chr2:18170254-18170298
Length
570 bp
Sequences
Splice sites
3' ss Seq
TTGTGTATATTTTGCTACAGGCA
3' ss Score
7.99
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACTTATACAAGCACTAGCAACAACTCCATATCTGGATCATTGAAGCGCTTGGAAGATACTGCAGCAAGATTTACAAATGCAAATTTCCAGGAAGTCTCTGCCCATACCTCTAGTGGAAAAGATGTTTCAGAGGCTAGAGGGTCAGAGGGCAAAGGGAAGAAATCTTCAGCTCACAGCTCAGGTCAAAGGGGAAGGAAGCCTGGTGCAGGAAGAAATCCAGGAACAGCTGTGTCAGCATCTAGCCCCTTTCCACAAG
Seq A exon
GCAGTTTTTCAGGAACTCCAGGCAGTGTAAAGTCATCTTCTGGAAGTTCAGTGCAGTCTCCCCAGGACTTCTTAAGCTTTACAGACTCAGATCTGCGAAGTGACAGTTACACTCACACCCAGCAGCCATCATCAACCAAAGATGTACATAAAGGAGAGTCTGGAAGCCAGGAAGCGGCAGTAAACAGTTTTAGCTCTTTAGTTGGTCACCCTGTGACCTCGACTGTTATTTCACAGCCTAAAAGCTTTGACAATTCACCTGGAGAGTTGGGTAGTTCGAGCCTCCCTACAGCAGGATATAAGCGGGCTCAGACTTCTGGTATAGAAGAAGAAGCTGTAAAGGAAAAGAAACGAAAAGGAAATAAGCAAAGCAAACATGGCCCCGGCCGACCCAAAGGAAACAAAAATCAAGAAAATGTTTCTCACCTCTCAGTTTCTTCTGCTTCACCAACATCGTCCGTAGCATCAGCTGCAGGAAGTGTAACAAGCTCTAGTCTTCAGAAATCTCCTACGCTGCTCAGGAATGGAAGTTTGCAGAGTCTTAGTGTTGGCTCGTCTCCAGTTGGCTCAG
Seq C2 exon
AAATTTCCATGCAGTATCGACATGATGGAGCTTGTCCAACAACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026743_MULTIEX1-17/20=16-18
Average complexity
S*
Mappability confidence:
95%=95=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.994 C2=0.546
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTATACAAGCACTAGCAACAACT
R:
TGGACAAGCTCCATCATGTCG
Band lengths:
294-864
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types