GgaEX0028340 @ galGal4
Exon Skipping
Gene
ENSGALG00000007928 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr2:17836698-17859882:-
Coord C1 exon
chr2:17859627-17859882
Coord A exon
chr2:17857474-17858040
Coord C2 exon
chr2:17836698-17836876
Length
567 bp
Sequences
Splice sites
3' ss Seq
TACTTTTTTTTCCTCTATAGGAA
3' ss Score
11.52
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACTTACACAAGCACTAGCAACAACTCCATGTCAGGCTCCTTGAAGCGTCTGGAAGATACTACGGCTCGATTTACAAATGCAAATTTCCAGGAAGTTTCTACACACGTTTCAAGTGGAAAAGATTCTTCAGAGGCTAGAGGGTCAGAGAGCAAAGGGAAGAAATCTGCAGGTCACAGCTCGGGTCAGAGGGGAAGAAAGCCTGGTGCTGGAAGAAATCCAGGAACAACTGTGACTGCAGCTAGCCCTTTTCAGCAAG
Seq A exon
GAAGCTTTTTGGGCACTCCTGGGAGCATAAAGTCATCTTCTGGAAGTTCAGTTCAGTCTCCCCAGGATTTTTTGAGTTTTACAGAAACAGATCTGAGAAGTGACAGTTTCACTCATTCTCAACAGGCTTCGTCAACCAAAGATGTACATAAAGGAGAGACTGGGAGTCAAGAGGGAGGTGTCAACTGTTTCACTTCCTTAATTGGTCTCCCTTCATCATCAGCTGTTTCCCAATCTAAAAACTTTGACAGCTCACCTGGAGACATAAGTAATTCAAGCCTTACTTCTACAGCATACAAAAGAGCTCAAACTTCTGGAATAGAAGAGGAAACTGTAACAGAGAAGAAACGGAAAGGAAATAAGCAAAGTAAACATGGGCCTGGTAGACCCAAAGGAAATAAAAGTCAAGAAAATATTTCCCATCTTTCAGTTTCTTCCGCTTCCCCAACTTCATCTGTGGCATCTGCTGCAGGAAGTGTGACAAGCTCTGGTCTTCAAAAATCTCCAACTTTGCTCAGGAATGGAAGTTTACAAAGTCTTAGTGTTGGCTCATCTCCAGTGGGTTCAG
Seq C2 exon
GTATTTTTAGCAGCAATGATGTAGCAGTATCATTTCCAAATGCAGTATCTGGCTCAGGATCTAGCACTCCCGTTTCCAGTTCTCATTTACCTCAGCAGGCTTCAGGCCACTTGCAGCAAGTGGGAGCTCTATCACCTTCAACTGCGCCTTCTATAACTACTGTTGTTGCTGCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928_MULTIEX2-10/14=9-12
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.925 C2=0.783
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTTGAAGCGTCTGGAAG
R:
GATAGAGCTCCCACTTGCTGC
Band lengths:
355-922
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]