GgaEX0028340 @ galGal3
Exon Skipping
Gene
ENSGALG00000007928 | MLLT10
Description
NA
Coordinates
chr2:17867900-17891550:-
Coord C1 exon
chr2:17891295-17891550
Coord A exon
chr2:17889142-17889708
Coord C2 exon
chr2:17867900-17868078
Length
567 bp
Sequences
Splice sites
3' ss Seq
TACTTTTTTTTCCTCTATAGGAA
3' ss Score
11.52
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACTTACACAAGCACTAGCAACAACTCCATGTCAGGCTCCTTGAAGCGTCTGGAAGATACTACGGCTCGATTTACAAATGCAAATTTCCAGGAAGTTTCTACACACGTTTCAAGTGGAAAAGATTCTTCAGAGGCTAGAGGGTCAGAGAGCAAAGGGAAGAAATCTGCAGGTCACAGCTCGGGTCAGAGGGGAAGAAAGCCTGGTGCTGGAAGAAATCCAGGAACAACTGTGACTGCAGCTAGCCCTTTTCAGCAAG
Seq A exon
GAAGCTTTTTGGGCACTCCTGGGAGCATAAAGTCATCTTCTGGAAGTTCAGTTCAGTCTCCCCAGGATTTTTTGAGTTTTACAGAAACAGATCTGAGAAGTGACAGTTTCACTCATTCTCAACAGGCTTCGTCAACCAAAGATGTACATAAAGGAGAGACTGGGAGTCAAGAGGGAGGTGTCAACTGTTTCACTTCCTTAATTGGTCTCCCTTCATCATCAGCTGTTTCCCAATCTAAAAACTTTGACAGCTCACCTGGAGACATAAGTAATTCAAGCCTTACTTCTACAGCATACAAAAGAGCTCAAACTTCTGGAATAGAAGAGGAAACTGTAACAGAGAAGAAACGGAAAGGAAATAAGCAAAGTAAACATGGGCCTGGTAGACCCAAAGGAAATAAAAGTCAAGAAAATATTTCCCATCTTTCAGTTTCTTCCGCTTCCCCAACTTCATCTGTGGCATCTGCTGCAGGAAGTGTGACAAGCTCTGGTCTTCAAAAATCTCCAACTTTGCTCAGGAATGGAAGTTTACAAAGTCTTAGTGTTGGCTCATCTCCAGTGGGTTCAG
Seq C2 exon
GTATTTTTAGCAGCAATGATGTAGCAGTATCATTTCCAAATGCAGTATCTGGCTCAGGATCTAGCACTCCCGTTTCCAGTTCTCATTTACCTCAGCAGGCTTCAGGCCACTTGCAGCAAGTGGGAGCTCTATCACCTTCAACTGCGCCTTCTATAACTACTGTTGTTGCTGCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928_MULTIEX1-9/21=8-13
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.889 C2=0.650
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTTGAAGCGTCTGGAAG
R:
GATAGAGCTCCCACTTGCTGC
Band lengths:
355-922
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]