DreEX0047921 @ danRer10
Exon Skipping
Gene
ENSDARG00000070412 | mtmr7b
Description
myotubularin related protein 7b [Source:ZFIN;Acc:ZDB-GENE-050913-66]
Coordinates
chr1:15805594-15807860:-
Coord C1 exon
chr1:15807726-15807860
Coord A exon
chr1:15805804-15805936
Coord C2 exon
chr1:15805594-15805703
Length
133 bp
Sequences
Splice sites
3' ss Seq
CTCTTTGTAACTATCTCCAGCTG
3' ss Score
7.72
5' ss Seq
ATGGTAGAT
5' ss Score
3.06
Exon sequences
Seq C1 exon
GCATCGATCTGTCGGAGCAGTCAGCCCCTCTCTGGCTTCAGCGCACGATCCTCAGACGATGAGCAGATGCTGCAAGCGATCATGAAGTCAAACCCTGTCAGTGAGTTCATGTATGTGGTGGACACAAGGCCAAAG
Seq A exon
CTGAATGCCATGGCTAATCGTGCCGCAGGGAAGGGCTATGAAAATGAAGACCACTACACTAACATAAAACTTCAGTTCATTGGCATAGAAAACATCCATGTCATGAGAAACAGCCAACAGAAGCTTATAGATG
Seq C2 exon
TCGGTGATATGGCGGCTCCCTCCATGGCTGATTTCCTCTGGGGTCTGGAAAACTCAGGGTGGCTAAAACACATCAAAGCTGTACTAGATGCTGGAGTCTTCATCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070412_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(12.8=100)
C2:
PF066029=Myotub-related=FE(10.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGTCGGAGCAGTCAGC
R:
TGCGATGAAGACTCCAGCATC
Band lengths:
237-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]