DreEX0048347 @ danRer10
Exon Skipping
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7408906-7433867:+
Coord C1 exon
chr6:7408906-7409062
Coord A exon
chr6:7431290-7431317
Coord C2 exon
chr6:7433765-7433867
Length
28 bp
Sequences
Splice sites
3' ss Seq
GTCTCTTTTTTTTTTTGCAGATC
3' ss Score
12.61
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ACATACTCAGGACTCTTCTGCGTGGTCATAAACCCATACAAAAACCTCCCCATATACTCTGAGAACATCATCGAGATGTACAGGGGCAAGAAGAGGCACGAGATGCCGCCTCATATCTACGCCATTTCCGAATCGGCATACAGATGCATGCTTCAAG
Seq A exon
ATCGTGAGGACCAATCAATTCTTTGCAC
Seq C2 exon
CGGAGAATCAGGTGCTGGAAAGACCGAAAACACCAAAAAAGTCATCCAGTACCTGGCTCACGTCGCATCATCTCACAAAGGAAGGAAGGACCACAACATTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.100 C2=0.314
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.5=100)
A:
PF0006316=Myosin_head=FE(1.3=100)
C2:
PF0006316=Myosin_head=FE(4.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCGAGATGTACAGGGGCA
R:
TTTCGGTCTTTCCAGCACCTG
Band lengths:
119-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]