MmuEX1017926 @ mm10
Exon Skipping
Gene
ENSMUSG00000022443 | Myh9
Description
myosin, heavy polypeptide 9, non-muscle [Source:MGI Symbol;Acc:MGI:107717]
Coordinates
chr15:77795961-77808024:-
Coord C1 exon
chr15:77807868-77808024
Coord A exon
chr15:77797001-77797028
Coord C2 exon
chr15:77795961-77796054
Length
28 bp
Sequences
Splice sites
3' ss Seq
TGGTGTCCTCTTTGTTGCAGACC
3' ss Score
10.22
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
ACCTATTCAGGCCTGTTCTGTGTGGTCATCAACCCTTATAAGAACCTGCCCATCTACTCAGAGGAGATCGTGGAGATGTACAAGGGCAAGAAGAGGCACGAGATGCCACCCCACATCTACGCCATCACAGATACTGCCTACCGGAGCATGATGCAGG
Seq A exon
ACCGGGAAGATCAGTCCATCCTGTGCAC
Seq C2 exon
GGGGGAGTCTGGAGCAGGGAAGACAGAGAACACCAAGAAAGTCATCCAGTACCTGGCACATGTGGCCTCCTCACACAAGAGCAAGAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022443-'4-12,'4-9,11-12
Average complexity
S
Mappability confidence:
100%=100=83%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.144
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(11.7=100)
A:
PF0006316=Myosin_head=FE(1.3=100)
C2:
PF0006316=Myosin_head=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGGAGATGTACAAGGGCA
R:
CTCTGTCTTCCCTGCTCCAGA
Band lengths:
118-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types