GgaEX7000543 @ galGal4
Exon Skipping
Gene
ENSGALG00000012533 | MYH9
Description
myosin-9 [Source:RefSeq peptide;Acc:NP_990808]
Coordinates
chr1:51617579-51629226:+
Coord C1 exon
chr1:51617579-51617735
Coord A exon
chr1:51628342-51628369
Coord C2 exon
chr1:51629133-51629226
Length
28 bp
Sequences
Splice sites
3' ss Seq
TGTTTTAAATTTTATTCTAGACC
3' ss Score
8.09
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ACCTACTCAGGCCTGTTCTGTGTGGTAATCAATCCTTACAAGAACCTGCCAATATACTCAGAAGAAATAGTGGAGATGTACAAAGGCAAAAAGAGGCATGAGATGCCCCCTCACATCTACGCCATCACAGACACAGCCTACCGGAGTATGATGCAAG
Seq A exon
ACCGAGAGGATCAGTCCATCCTTTGCAC
Seq C2 exon
AGGCGAATCAGGAGCTGGTAAGACGGAGAACACCAAGAAGGTCATTCAGTATCTGGCTCACGTTGCTTCCTCACACAAGTCTAAAAAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012533-'10-9,'10-7,14-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.148
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(41.6=100)
A:
PF0006316=Myosin_head=FE(1.3=100)
C2:
PF0006316=Myosin_head=FE(24.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCACAGACACAGCCTAC
R:
TGTGTGAGGAAGCAACGTGAG
Band lengths:
114-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]