HsaEX6026589 @ hg19
Exon Skipping
Gene
ENSG00000100345 | MYH9
Description
myosin, heavy chain 9, non-muscle [Source:HGNC Symbol;Acc:7579]
Coordinates
chr22:36722613-36737571:-
Coord C1 exon
chr22:36737415-36737571
Coord A exon
chr22:36723506-36723533
Coord C2 exon
chr22:36722613-36722706
Length
28 bp
Sequences
Splice sites
3' ss Seq
TGATGTCTTCTTTGTTTCAGACC
3' ss Score
9.98
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
ACCTATTCAGGCCTGTTCTGTGTGGTCATCAATCCTTACAAGAACCTGCCCATCTACTCTGAAGAGATTGTGGAAATGTACAAGGGCAAGAAGAGGCACGAGATGCCCCCTCACATCTATGCCATCACAGACACCGCCTACAGGAGTATGATGCAAG
Seq A exon
ACCGAGAAGATCAATCCATCTTGTGCAC
Seq C2 exon
TGGTGAATCTGGAGCTGGCAAGACGGAGAACACCAAGAAGGTCATCCAGTATCTGGCGTACGTGGCGTCCTCGCACAAGAGCAAGAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345-'8-12,'8-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.243 C2=0.134
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(39.4=100)
A:
PF0006316=Myosin_head=FE(1.3=100)
C2:
PF0006316=Myosin_head=FE(23.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACACCGCCTACAGGAGTA
R:
TTCTTGCTCTTGTGCGAGGAC
Band lengths:
117-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)