DreEX0048415 @ danRer10
Exon Skipping
Gene
ENSDARG00000001014 | myh9b
Description
myosin, heavy chain 9b, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-998]
Coordinates
chr3:5268985-5278346:-
Coord C1 exon
chr3:5278190-5278346
Coord A exon
chr3:5270057-5270084
Coord C2 exon
chr3:5268985-5269078
Length
28 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTCTCCGCCCACAGACC
3' ss Score
11.55
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ACATACTCGGGTCTGTTCTGCGTGGTCATCAACCCCTACAAGAACCTGCCCATCTACTCAGAGGAGATCGTGGACATGTACAAGGGCAAGAAACGCCACGAGATGCCACCGCACATCTACGCCATCACAGACACGGCCTACAGGAGCATGATGCAGG
Seq A exon
ACCGTGAGGACCAATCGATTCTCTGCAC
Seq C2 exon
AGGTGAATCTGGAGCTGGAAAGACAGAAAACACCAAGAAGGTCATTCAGTATCTGGCTCACGTGGCGTCATCTCACAAAACCAAGAAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001014-'8-6,'8-5,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.164
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
PF0006316=Myosin_head=FE(1.3=100)
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACAGACACGGCCTACAG
R:
TTTTGTGAGATGACGCCACGT
Band lengths:
115-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]