DreEX0048554 @ danRer10
Exon Skipping
Gene
ENSDARG00000074143 | myo10l3
Description
myosin X-like 3 [Source:ZFIN;Acc:ZDB-GENE-070912-237]
Coordinates
chr9:12740976-12752363:-
Coord C1 exon
chr9:12752255-12752363
Coord A exon
chr9:12749617-12749697
Coord C2 exon
chr9:12740976-12741100
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTGTGTGTGTTTCAGGAC
3' ss Score
12.98
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCTTGACTTCATCTATGACCTGTTTGAGCGTTTTGGCAGCAGGAGTGGAGATGAGACTCTGAAGATGGGCACCGCCCGCCGCAAACCCACCGTCAGCTCTCAATTCAGG
Seq A exon
GACTCTCTTCATGCACTGATGGCCACTTTAAGTGCCTCCAATCCTTTCTTTGTGCGCTGCATTAAACCTAACATGGAGAAG
Seq C2 exon
AATGCGAATAAATTTGACTCAGATGTGGTTCTGAACCAGCTCCGCTACTCTGGAATGCTGGAAACAGTGAAGATCCGAAGAGCTGGCTTTCCAGTACGCAGAACCTTCCAAGATTTCCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074143_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(3.9=100)
C2:
PF0006316=Myosin_head=FE(6.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTTTGAGCGTTTTGGCAG
R:
GCCAGCTCTTCGGATCTTCAC
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]