RnoEX0057142 @ rn6
Exon Skipping
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:78003741-78034172:+
Coord C1 exon
chr2:78003741-78003849
Coord A exon
chr2:78005741-78005821
Coord C2 exon
chr2:78034048-78034172
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCCTCCTCCTTATAGGAC
3' ss Score
12.52
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATTTGACTTCATCTATGACCTCTTTGAACACATCTCCAGCCGCAACAACCAGGACACCTTGAAATGTGGAAGCAAACACCGGCGGCCTACTGTCAGCTCACAGTTCAAG
Seq A exon
GACTCCCTGCACTCCTTAATGGCAACACTAAGCTCCTCGAATCCCTTCTTTGTCAGATGCATCAAGCCAAACACGCAGAAG
Seq C2 exon
ATGCCAGACCAGTTTGATCAGGCCGTCGTGCTCAACCAGCTGCGCTACTCTGGGATGCTGGAGACGGTGAGGATTCGAAAGGCAGGATATGCAGTCCGAAGACCCTTTCAGGATTTTTACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161-'26-31,'26-29,28-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.7=100)
A:
PF0006316=Myosin_head=FE(6.3=100)
C2:
PF0006316=Myosin_head=FE(9.9=100)
Main Skipping Isoform:
ENSRNOT00000065897fB9219
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACAACCAGGACACCTTGA
R:
CTGAAAGGGTCTTCGGACTGC
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]