BtaEX6075918 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56466499-56529222:+
Coord C1 exon
chr20:56466499-56466607
Coord A exon
chr20:56469125-56469205
Coord C2 exon
chr20:56529088-56529222
Length
81 bp
Sequences
Splice sites
3' ss Seq
TACTTTTTTCTTTCTCATAGGAC
3' ss Score
10.6
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTCGACTTCATCTACGACCTCTTCGAACACGTTTCCAGCCGCAATAATCAGGATACCTTGAAATGCGGAAGCAAACACCGGCGGCCCACGGTCAGCTCGCAGTTCAAG
Seq A exon
GACTCCCTGCATTCCTTAATGGCAACGCTAAGCGCCTCTAATCCTTTCTTTGTTCGCTGTATCAAGCCAAACATGCAGAAG
Seq C2 exon
ATGCCTGACCAGTTTGACCAGGCAGTCGTGGTCAACCAGCTGCGGTACTCGGGGATGCTGGAGACGGTCAGGATCCGGAAAGCTGGCTATGCCGTCCGGAGACCCTTCCAGGACTTTTACAAAAGGCAAGATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126-'33-33,'33-28,34-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(3.9=100)
C2:
PF0006316=Myosin_head=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCGAACACGTTTCCAGCC
R:
ATAGCCAGCTTTCCGGATCCT
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]