HsaEX0041017 @ hg19
Exon Skipping
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:7593]
Coordinates
chr5:16711230-16758335:-
Coord C1 exon
chr5:16758227-16758335
Coord A exon
chr5:16754937-16755017
Coord C2 exon
chr5:16711230-16711354
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACATATACTTTTTCTAATAGGAC
3' ss Score
8.55
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTTGACTTTATCTACGATCTTTTTGAACATGTTTCAAGCCGCAACAACCAGGATACCTTGAAATGTGGAAGCAAACATCGGCGGCCTACAGTCAGCTCACAGTTCAAG
Seq A exon
GACTCACTGCATTCCTTAATGGCAACGCTAAGCTCCTCTAATCCTTTCTTTGTTCGCTGTATCAAGCCAAACATGCAGAAG
Seq C2 exon
ATGCCAGACCAGTTTGACCAGGCGGTTGTGCTGAACCAGCTGCGGTACTCAGGGATGCTGGAGACTGTGAGAATCCGCAAAGCTGGGTATGCGGTCCGAAGACCCTTTCAGGACTTTTACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(3.9=100)
C2:
PF0006316=Myosin_head=PU(48.8=97.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCAAGCCGCAACAACCAG
R:
TACCCAGCTTTGCGGATTCTC
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)