HsaEX0041017 @ hg38
Exon Skipping
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr5:16711121-16758226:-
Coord C1 exon
chr5:16758118-16758226
Coord A exon
chr5:16754828-16754908
Coord C2 exon
chr5:16711121-16711245
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACATATACTTTTTCTAATAGGAC
3' ss Score
8.55
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTTGACTTTATCTACGATCTTTTTGAACATGTTTCAAGCCGCAACAACCAGGATACCTTGAAATGTGGAAGCAAACATCGGCGGCCTACAGTCAGCTCACAGTTCAAG
Seq A exon
GACTCACTGCATTCCTTAATGGCAACGCTAAGCTCCTCTAATCCTTTCTTTGTTCGCTGTATCAAGCCAAACATGCAGAAG
Seq C2 exon
ATGCCAGACCAGTTTGACCAGGCGGTTGTGCTGAACCAGCTGCGGTACTCAGGGATGCTGGAGACTGTGAGAATCCGCAAAGCTGGGTATGCGGTCCGAAGACCCTTTCAGGACTTTTACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555_MULTIEX1-1/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.234 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=FE(3.9=100)
C2:
PF0006316=Myosin_head=PU(34.8=95.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCAAGCCGCAACAACCAG
R:
TACCCAGCTTTGCGGATTCTC
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development