GgaEX0019592 @ galGal3
Exon Skipping
Gene
ENSGALG00000012954 | MYO10
Description
NA
Coordinates
chr2:77283990-77312459:+
Coord C1 exon
chr2:77283990-77284098
Coord A exon
chr2:77287209-77287289
Coord C2 exon
chr2:77312335-77312459
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTGCTGTCTTTGTGTTTTAGGAA
3' ss Score
12.46
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TCTTGATTTCATCTATGATCTATTTGAACACGTTTCAAGTCGCAACAATCAAGACACTCTTAAATGCGGAAGCAAGCACAGAAAACCCACTGTCAGTCTACAGTTCAAG
Seq A exon
GAATCACTCCATTCCTTAATGGCAACGCTGAGTTCTTCAAATCCTTTCTTTGTTCGGTGCATCAAACCCAATGTGCAGAAG
Seq C2 exon
ATGCCAGATCAGTTTGATCAGACAGTGGTGCTCAACCAACTGCGCTACTCTGGGATGCTGGAGACCGTGAGGATTCGGAGGGCTGGCTTCCCAGTCCGAAGGCCCTTCCAAGACTTTTATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954-'17-20,'17-18,18-20
Average complexity
S
Mappability confidence:
78%=100=60%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(3.9=100)
C2:
PF0006316=Myosin_head=FE(6.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGTTTCAAGTCGCAACAA
R:
CCAGCCCTCCGAATCCTCA
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]