DreEX0048528 @ danRer10
Exon Skipping
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42781097-42792082:-
Coord C1 exon
chr2:42791974-42792082
Coord A exon
chr2:42787959-42788039
Coord C2 exon
chr2:42781097-42781221
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTATTTTTTGTCTTTCCCAGAAT
3' ss Score
10.31
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCTGGATTTTGTGTATGATCTGTTTGAGCGAGTGAACGCCTGGACCGGACAGGACACGGTCAAGTGCGGATCAAAGTATCGCAGACCTACAGTTAGCTCTCAGTTTAAG
Seq A exon
AATTCATTGCACTCTCTGATGTCCACCCTTAGTACCTCCAATCCGTTCTTTGTACGCTGCATTAAACCCAACATTAGCAAG
Seq C2 exon
ATGCCCGGTCAGTTTGAGCAGACTGTGGTCCTCAATCAGCTCAGATATTCTGGGATGTTGGAAACAGTGAAAATCAGACGTTCTGGGTTTCCCATCAGGAGGACGTTTAAGGATTTCTGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004-'22-18,'22-17,23-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(3.9=100)
C2:
PF0006316=Myosin_head=FE(6.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGTCAAGTGCGGATCAAA
R:
CCTTAAACGTCCTCCTGATGGG
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]