MmuEX6052937 @ mm9
Exon Skipping
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25672096-25705900:+
Coord C1 exon
chr15:25672096-25672204
Coord A exon
chr15:25673931-25674011
Coord C2 exon
chr15:25705776-25705900
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTTCCTCCTTACAGGAC
3' ss Score
13.47
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTTCGACTTCATCTATGACCTCTTTGAACACGTCTCCAGCCGCAACAACCAGGACACCTTGAAATGCGGAAGCAAACACCGGCGGCCCACTGTCAGCTCGCAGTTCAAG
Seq A exon
GACTCCCTGCACTCCTTAATGGCAACACTAAGCTCCTCAAATCCTTTCTTTGTCAGATGCATCAAGCCAAACACACAGAAG
Seq C2 exon
ATGCCAGACCAGTTTGATCAGGTGGTAGTGCTCAACCAGCTGCGCTACTCGGGGATGCTGGAGACGGTGAGGATTCGGAAAGCAGGGTATGCCGTCAGAAGACCCTTTCAGGACTTTTACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-'24-31,'24-23,25-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(32.5=100)
C2:
PF0006316=Myosin_head=PU(48.8=97.6)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACAACCAGGACACCTTGA
R:
CTGAAAGGGTCTTCTGACGGC
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: