GgaEX1002526 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEA4]
Coordinates
chr7:21462447-21464267:-
Coord C1 exon
chr7:21464159-21464267
Coord A exon
chr7:21463296-21463376
Coord C2 exon
chr7:21462447-21462571
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTGCTGCTTTTTAGGAT
3' ss Score
11.14
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GCTGGACTTCATCTATGACCTTTTTGAAAGAGTCTGCAGCCGTTGCAATGAAGAGACGCTGAAGATGGGCACCCAGAGGCGCAGACCGACTGTCAGCTCCCAGTTCAGG
Seq A exon
GATTCTCTCCATTCCCTGATGGCAACGCTTAGCACTTCCAACCCGTTCTTCATCCGCTGCATCAAACCAAACACAGAAAAG
Seq C2 exon
GCACCGAACCTCTTCAATCCAGACGTGGTTCTCAATCAGCTCCGGTACTCAGGGATGCTGGAGACGGTGAAAGTCCGGCGAGCAGGTTTCCCCATCCGGCGCCTTTTCCAGGACTTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172-'21-25,'21-23,22-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(3.9=100)
C2:
PF0006316=Myosin_head=FE(6.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGACGCTGAAGATGGGC
R:
AGAAAGTCCTGGAAAAGGCGC
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]