DreEX6020798 @ danRer10
Exon Skipping
Gene
ENSDARG00000074723 | myo10l1
Description
myosin X-like 1 [Source:ZFIN;Acc:ZDB-GENE-080425-1]
Coordinates
chr6:10902559-10903095:-
Coord C1 exon
chr6:10902987-10903095
Coord A exon
chr6:10902777-10902857
Coord C2 exon
chr6:10902559-10902683
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTGATTTTTCTGCTCCTCAGGAC
3' ss Score
9.22
5' ss Seq
AAAGTGAGA
5' ss Score
4.23
Exon sequences
Seq C1 exon
GCTGGATTTCATCTATGACTTGTTTGAGCAAGTGAGCAGCAGAAATAACGAGGAGACCTTGAAGATGGGCACGGCCAGAAAAAAGCCCACCGTCAGCTCTCAGTTCAGA
Seq A exon
GACTCTCTTCATTCCCTAATGGCCACTCTCAGTGTGTCCAATCCCTTCTTTGTGCGTTGCATCAAACCAAACATGGACAAA
Seq C2 exon
ACACCAAACAAGTTTGACCCAGAAGTGGTTCTTAATCAGCTGCGGTACTCTGGCATGCTGGAGACAGTGAAGATTCGCAGAGCCGGATTCCCTGTCAGACGCACATTTAAAGACTTCTTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074723-'18-21,'18-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(14.6=100)
A:
PF0006316=Myosin_head=FE(10.6=100)
C2:
PF0006316=Myosin_head=FE(16.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGAGCAAGTGAGCAGCA
R:
AATCCGGCTCTGCGAATCTTC
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]