DreEX0048693 @ danRer10
Exon Skipping
Gene
ENSDARG00000006892 | myo3b
Description
myosin IIIB [Source:ZFIN;Acc:ZDB-GENE-070706-2]
Coordinates
chr9:3778271-3787924:-
Coord C1 exon
chr9:3787762-3787924
Coord A exon
chr9:3784112-3784192
Coord C2 exon
chr9:3778271-3778325
Length
81 bp
Sequences
Splice sites
3' ss Seq
GCGTCTCCATCTGTGTGTAGCCT
3' ss Score
6.69
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTGTTTCTGAAGTATTATCACGTGGAGCAGCTCAATCTGATGTTGCGGGAAGTGATCGCTCGAGTGGTGTTGATGCAAGCCTACACCAAGGGCTGGCTGGGCGCTCGACGCTACCGCAGAGAGAGAGAGAAACGCCGCAATGGGGCAGTCGTCATACAGTCAG
Seq A exon
CCTGGAGGGGTCACGTGGCTCGTCAGAATCTGAAGCTGATAAAGAGAGAGCGTGAACAGGCCGCTGTGCAGATCCAGTCAG
Seq C2 exon
TATACCGAGGCTACAGAGTCAGGAAGGACTACAAACAGAGTCGACAATGGACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006892-'28-28,'28-27,29-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.276
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=5.5),PF0061222=IQ=PU(42.9=16.4)
A:
PF0061222=IQ=PD(52.4=39.3),PF0061222=IQ=PU(42.9=32.1)
C2:
PF0061222=IQ=PD(52.4=57.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACGTGGAGCAGCTCAATC
R:
TTCCTGACTCTGTAGCCTCGG
Band lengths:
172-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]