MmuEX6102017 @ mm9
Exon Skipping
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70152333-70168997:+
Coord C1 exon
chr2:70152333-70152495
Coord A exon
chr2:70153407-70153487
Coord C2 exon
chr2:70168889-70168997
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACATGGTTTTCTATTTTTAGCCT
3' ss Score
7.32
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTTTTCCTCAAATATTACCATGTCGAGCAATTAAATTTGCTTCTGCGAGAAGTCATGGGACGAGTGGTCATGCTGCAGGCATATACCAAGGGCTGGCTCGGAGCAAGGAGATACAAGAGAGCCAAAGAGAAGAGAGAGAAGGGCGCCATCACCATCCAGTCAG
Seq A exon
CCTGGAGAGGCTATGATGCTCGGAGGAAATTGAAGCAAAGAAGCCGGAGGAGGAGTGAGTCCGAGGCTCACATTCACACAG
Seq C2 exon
TTCTCCAAACCACTCCTGATCAGAAATACTGTCCAGATTCAGGAGGAGAGTCCAACAGAGGTCATGAAGAGACGTCAAGGAACTGCCCCGCTGAAGCCGACACAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064-'31-33,'31-31,32-33=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.714 C2=1.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=5.5),PF0061222=IQ=PU(42.9=16.4)
A:
PF0061222=IQ=PD(52.4=39.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCATATACCAAGGGCTG
R:
GGCAGTTCCTTGACGTCTCTT
Band lengths:
176-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: