MmuEX6102017 @ mm10
Exon Skipping
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70314276-70330940:+
Coord C1 exon
chr2:70314276-70314438
Coord A exon
chr2:70315350-70315430
Coord C2 exon
chr2:70330832-70330940
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACATGGTTTTCTATTTTTAGCCT
3' ss Score
7.32
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTTTTCCTCAAATATTACCATGTCGAGCAATTAAATTTGCTTCTGCGAGAAGTCATGGGACGAGTGGTCATGCTGCAGGCATATACCAAGGGCTGGCTCGGAGCAAGGAGATACAAGAGAGCCAAAGAGAAGAGAGAGAAGGGCGCCATCACCATCCAGTCAG
Seq A exon
CCTGGAGAGGCTATGATGCTCGGAGGAAATTGAAGCAAAGAAGCCGGAGGAGGAGTGAGTCCGAGGCTCACATTCACACAG
Seq C2 exon
TTCTCCAAACCACTCCTGATCAGAAATACTGTCCAGATTCAGGAGGAGAGTCCAACAGAGGTCATGAAGAGACGTCAAGGAACTGCCCCGCTGAAGCCGACACAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064-'41-49,'41-44,48-49=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.714 C2=1.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=5.5),PF0061222=IQ=PU(42.9=16.4)
A:
PF0061222=IQ=PD(52.4=39.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCATATACCAAGGGCTG
R:
GGCAGTTCCTTGACGTCTCTT
Band lengths:
176-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types