HsaEX0041182 @ hg19
Exon Skipping
Gene
ENSG00000071909 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:15576]
Coordinates
chr2:171356156-171371532:+
Coord C1 exon
chr2:171356156-171356318
Coord A exon
chr2:171358295-171358375
Coord C2 exon
chr2:171371431-171371532
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACATGGTTTTATATTTTTAGCCT
3' ss Score
6.06
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTTTTTCTCAAATATTACCATGTTGAGCAATTAAATTTGCTGCTTCGAGAAGTCATAGGCAGAGTGGTTGTGCTGCAGGCATATACCAAGGGGTGGCTTGGAGCCAGGAGATACAAAAGGGTCAGAGAGAAGAGAGAGAAGGGAGCCATTGCCATCCAGTCAG
Seq A exon
CCTGGAGAGGATATGATGCTCGGAGGAAATTTAAGAAAATAAGCAACAGAAGGAATGAGTCTGCTGCTCATAATCAAGCAG
Seq C2 exon
GGGACACTTCAAACCAAAGCAGTGGGCCACATTCCCCCGTCGCAGCAGGTACGAGGGGAAGTGCCGAGGTTCAAGACTGCAGCGAGCCTGGTGACCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071909_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.571 C2=1.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=5.5),PF072198=HemY_N=PU(85.2=83.6)
A:
PF0061222=IQ=PD(52.4=39.3)
C2:
PF072198=HemY_N=PD(13.0=20.0)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGGCATATACCAAGGG
R:
GTCTTGAACCTCGGCACTTCC
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)