DreEX0051323 @ danRer10
Exon Skipping
Gene
ENSDARG00000018721 | npnt
Description
nephronectin [Source:ZFIN;Acc:ZDB-GENE-090312-201]
Coordinates
chr1:49534771-49540730:+
Coord C1 exon
chr1:49534771-49535217
Coord A exon
chr1:49539932-49540021
Coord C2 exon
chr1:49540632-49540730
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCCCCCATTCTAGTAC
3' ss Score
10.29
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCATCCCAAAGGTGGTAATTGACCCTCCACGACCTGGAAAGACCACACCGAGCAGCAATAACAACAAAGGCGGCAACAAAATTCCAGGATCAGACCAAAAGAGGACCACCACAACAGTAAGACCTCCAGTAACGGCCAAACGCATCTCACCTACAATCACCACCACCACCACTACCACCAAACCTCCTCCAACCAAAAAAATCACCCCTCCAGCAAGAGTCCCGGTGACCACCACCCGTAAGCCATTCATCCCAACAAGGAAGCCCCCTGTGCTGGTGACAACCAAACCTAAGGTCCCGACTCACCAGCACACCACCACAAAAGTCCCAGTGGTTACAGCAGTGGTTCCTTTTATCCCAACACGCAGACCTTTCACCATCCCGTTTGTGACACCAATTGATAACAGCATCAAAGACATCACCCAGAAACAAAGAGGCGATGTTCACA
Seq A exon
TACCACGAAATCATGGGAAGAACAATGTTCTTGGTATCGATTTAGACATTGAACTGGGCAACACCGAAGAGGAGCTGAAGGATGACCCAG
Seq C2 exon
AGTCTGGCTATCTGAGCTGCTCATTTGATCACGGTTTGTGTGGATGGATCCAGCGCAGAGAGGGAGACCTTCATTGGGAGACATCGGAAGATCCTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018721-'14-10,'14-9,15-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.820 A=0.581 C2=0.206
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062918=MAM=PU(18.9=79.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCAACACGCAGACCTTTC
R:
ATGAAGGTCTCCCTCTCTGCG
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]