GgaEX6034436 @ galGal4
Exon Skipping
Gene
ENSGALG00000010566 | NPNT
Description
nephronectin [Source:HGNC Symbol;Acc:HGNC:27405]
Coordinates
chr4:38006323-38012974:-
Coord C1 exon
chr4:38012648-38012974
Coord A exon
chr4:38006793-38006888
Coord C2 exon
chr4:38006323-38006421
Length
96 bp
Sequences
Splice sites
3' ss Seq
AAAACCTACTTTTCTCACAGTTC
3' ss Score
7.13
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
AAAGGCCGGTGACCAGACCAACAGCTCGACCCACACCTGGGCCAACAACTCGAACCACATTGAGGCCAACAACTCGACCCACACCAAAGCCAACCACTAGGTATGTACCTGTGACAACAAGGCCAGTAACAAAGCCAGTGACAAAGCCTCCACCTCCAACGCCACCTCTACCTACAACAGTAAGACCTACACTACCACCACAAAGAATTCCTCTGATAACCACCACACGTCCTTTGCTTGTTCCTGATGAAACTACGTCTTCCCAAGGAGCTACAGATGATAACAGGATACAGATAGATCCTCAGAAACCCCGAGGGGATGTGTTCA
Seq A exon
TTCCGCGCCAGCCCGGAGTGAGCAATAACCTGTTTGAAATACTTGAAATTGAAAGAGGGATTACTGCTGATGAATTTGAAGCAAATGATGACCCAG
Seq C2 exon
GCACGCTGGTACACAGCTGTAATTTTGACAGCGGCCTGTGTGGATGGATCAAGGACAAGGATGATGGTTTGCACTGGGAGCCAGTTAGAGACGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010566-'24-20,'24-19,29-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.525 C2=0.078
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062918=MAM=PU(19.0=79.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCTTCCCAAGGAGCTACA
R:
CACGTCTCTAACTGGCTCCCA
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]