RnoEX6011588 @ rn6
Exon Skipping
Gene
ENSRNOG00000052873 | Npnt
Description
nephronectin [Source:MGI Symbol;Acc:MGI:2148811]
Coordinates
chr2:238009644-238024037:-
Coord C1 exon
chr2:238023879-238024037
Coord A exon
chr2:238010271-238010357
Coord C2 exon
chr2:238009644-238009742
Length
87 bp
Sequences
Splice sites
3' ss Seq
CATCGCCCTCTCTCTTGCAGTTC
3' ss Score
11.99
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
CCNNNCCGCCCCTCCCAACAGAGCTCAGAACAACCCCACTACCACCAACCCCAGAAAGGCCAGCCACCAGCCCCACCACTGTGGCACCTGCTACACAAGTAGTCACCGTCGACAACAGGATACAGACGGATCCCCAGAAACCCAGAGGAGATGTGTTCA
Seq A exon
TTCCGAGGCAGCCTTCGAATGACCTGTTTGAAATATTTGAAATCGAAAGAGGAGTCAGCGCTGATGAGGAAGCGAAGGACGACCCAG
Seq C2 exon
GCATTCTCATACACAGCTGTAATTTTGACCATGGACTTTGTGGATGGATCAGAGAAAAGGATAGCGACTTGCACTGGGAGCCAACCAGGGACCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052873-'24-23,'24-22,25-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.981 A=0.267 C2=0.235
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062918=MAM=PU(19.3=79.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACAACCCCACTACCACCA
R:
CCATCCACAAAGTCCATGGTCA
Band lengths:
180-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]