MmuEX6074167 @ mm10
Exon Skipping
Gene
ENSMUSG00000040998 | Npnt
Description
nephronectin [Source:MGI Symbol;Acc:MGI:2148811]
Coordinates
chr3:132890764-132905053:-
Coord C1 exon
chr3:132904658-132905053
Coord A exon
chr3:132891402-132891488
Coord C2 exon
chr3:132890764-132890862
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGGCTTCTTCTCTTTTGTAGTTC
3' ss Score
8.75
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
ATATCCCCAAAGTCATGATTGAACCTTCAGGTCCAATCCATATGCCAGAAAGAAATGGTACAATCTCAAAGGGTGATGGAGGACATGCGAATAGGATTCCTGATGCTGGAAGTACAAGGTGGCCCCTGAAGACACCATATATTCCTCCTGTCATTACCAACAGGCCTACTTCCAAGCCAACAACAAGACCTACACCAAACCCAACACCACAGCCTACTCCACCACCTCCACCACCCCTCCCGACAGAGCCCAGAACAACTCCACTACCACCAACCCCAGAAAGGCCATCTACCAGACCCACCACTATAGCACCTGCTACCAGTACCACTACACGAGTAATTACGGTTGACAACAGGATACAGACGGATCCTCAGAAACCCAGAGGAGATGTGTTCA
Seq A exon
TTCCACGGCAGCCGACAAATGACCTGTTTGAGATATTTGAAATCGAAAGAGGGGTCAGCGCGGATGAGGAAGTAAAGGACGACCCAG
Seq C2 exon
GTATTCTCATACACAGCTGCAATTTTGACCATGGACTCTGTGGATGGATCAGAGAAAAAGATAGTGACTTGCACTGGGAGACAGCCAGGGACCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040998-'27-19,'27-18,30-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=0.622 C2=0.210
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062918=MAM=PU(19.3=79.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTGCTACCAGTACCACT
R:
CTGTCTCCCAGTGCAAGTCAC
Band lengths:
172-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types