DreEX0051453 @ danRer10
Exon Skipping
Gene
ENSDARG00000000796 | nr4a1
Description
nuclear receptor subfamily 4, group A, member 1 [Source:ZFIN;Acc:ZDB-GENE-040704-11]
Coordinates
chr23:32225175-32227541:-
Coord C1 exon
chr23:32227339-32227541
Coord A exon
chr23:32227080-32227258
Coord C2 exon
chr23:32225175-32226178
Length
179 bp
Sequences
Splice sites
3' ss Seq
AGATTTATTTATGCATTTAGGTC
3' ss Score
6.33
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
TATCAGGAATCAACATCTGGATTGCCTGAGAAGGAAGATGCCAACGACATACAGCAGTTTTATGACCTGCTAACAGGGTCAATGGATGTGATCAGGAAGTGGGCTGGAAGCATCCCTGGATTCAGTGCCTTTTGTAAGGAGGACCAAGAGCTTCTTCTGGAGTCAGCTTTTGTTGAGCTCTTCATACTTCGTCTAGCTTACAG
Seq A exon
GTCAAACCCTGAGACAGACAAACTTATTTTCTGCAATGGTGTGGTTTTGCACCGGACGCAGTGCGTACGAAGCTTTGGTGATTGGATTGACTCAATTATGGAGTTCTCTCAGAGTTTACATCGCTTGAATTTGGACATATCTGCTTTTTCCTGTCTTGCCACACTGGTCATAATCACAG
Seq C2 exon
ATCGACATGGCCTGAAAGAGCCCAAACGGATCGAAGACTTCCAAAACCGTTTGATCACATGTCTCAGAGACCACGTCTCCACAAGTGCCCTTGAGGTCGGCCGGCCCAACTCTCTGTCCCGACTGCTGAGCAAGCTCCCAGAGCTGAGAACACTGTGCACCCAAGGCCTCCAGCGAATCTTCTATCTCAAACTGGAAGACTTGGTCCCACCTCCACCCATTGTGGATAAAATCTTCATGGACACGTTGCCATTCTGAATGTGACTTTATAAATGGACAACCAGGGTGATGAACTGAGGATATGGGATGTTTGGGGAGCTCTTAAGGGTCTGACTAGTCAAAGGACTTTATCGCTTACGGTTTCTCTGCTTTCTTGGAAAGGGAGTCAGAGAAGGATGACATTCTACTTAACGCCTGTGTTTGAAGACCTTCATCGCATCGTCTTCAACACTGAACCTACTAAGTGACTGTATGCATTCAATAGACATGTCATTATCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000796-'6-13,'6-11,7-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(33.8=100)
A:
PF0010425=Hormone_recep=FE(30.3=100)
C2:
PF0010425=Hormone_recep=PD(33.3=79.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAGCATCCCTGGATTC
R:
ACAGTGTTCTCAGCTCTGGGA
Band lengths:
257-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]