MmuEX6056609 @ mm9
Exon Skipping
Gene
ENSMUSG00000023034 | Nr4a1
Description
nuclear receptor subfamily 4, group A, member 1 [Source:MGI Symbol;Acc:MGI:1352454]
Coordinates
chr15:101103149-101105223:+
Coord C1 exon
chr15:101103149-101103351
Coord A exon
chr15:101103446-101103624
Coord C2 exon
chr15:101104427-101105223
Length
179 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCTGCCTTCTGCCAGATC
3' ss Score
10.53
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TTCCAGGAACTGGTGCTGCCCCGCTTCGGGAAGGAAGATGCCGGTGACGTGCAACAATTTTATGACTTGCTCTCTGGTTCCCTGGACGTTATCCGAAAGTGGGCAGAAAAAATCCCTGGCTTCATTGAGCTTTGCCCAGGAGACCAAGACCTGTTGCTAGAGTCTGCCTTCCTGGAACTCTTCATCCTCCGCCTGGCATACCG
Seq A exon
ATCTAAACCCGGTGAGGGGAAGCTCATCTTCTGCTCAGGCCTGGTACTACACCAGCTGCAGTGTGCCCGTGGCTTTGGTGATTGGATTGACAACATCCTGGCCTTCTCACGGTCCCTGCACAGCTTGGGTGTTGATGTTCCCGCCTTTGCCTGCCTGTCCGCTCTGGTCCTCATCACTG
Seq C2 exon
ATCGACACGGGCTCCAGGACCCTCGTCGGGTGGAAGAGCTGCAGAATCGCATTGCTAGCTGTCTGAAGGAGCACATGGCTACCGTGGCAGGAGACCCACAGCCGGCCAGCTGCCTGTCACGTCTGCTGGGCAAACTGCCTGAGCTTCGGACCCTGTGCACTCAAGGCCTGCAGCGCATCTTTTGCCTCAAGTTGGAGGACTTGGTACCCCCTCCACCTATTGTGGACAAGATCTTTATGGACACATTGTCTTTCTGACCCCTGCCCTGAACATGTGTGCGCACACGTGCGTGCTCTTCTGTCACCCATGTGCCTTTAAGCCTATAGCCCACGGACCCCCAGACCACCCTACCCCCAGCCTGGTTTTGAGCTAAGACTGACGTACCTCCTCACTCCAGAAGATGGACAGAGAACTCAAGACCTGGGGGAGGGTGTGTATTCACGGGGGTGACCCCACTATTTGTCTTATCCCTCCAGCTCAGTCCTGGCCTTCGTGTGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023034-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(32.5=91.2)
A:
PF0010425=Hormone_recep=FE(31.4=100)
C2:
PF0010425=Hormone_recep=PD(35.6=79.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCGGGAAGGAAGATGCC
R:
TGCTCCTTCAGACAGCTAGCA
Band lengths:
254-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: