RnoEX0060871 @ rn6
Exon Skipping
Gene
ENSRNOG00000007607 | Nr4a1
Description
nuclear receptor subfamily 4, group A, member 1 [Source:RGD Symbol;Acc:620029]
Coordinates
chr7:142918117-142920216:+
Coord C1 exon
chr7:142918117-142918319
Coord A exon
chr7:142918409-142918587
Coord C2 exon
chr7:142919380-142920216
Length
179 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCTGCTTCCTCGCAGATC
3' ss Score
12.67
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TTCCAGGAACTGGTGCTGCCCCGCTTTGGAAAGGAAGATGCCGGTGACGTGCAGCAATTTTATGACTTGCTCTCTGGCTCCCTGGACGTCATCCGGAAGTGGGCGGAAAAGATCCCGGGCTTCATTGAGCTTTCCCCAGGAGACCAAGACCTGTTGCTAGAGTCCGCCTTTCTGGAGCTCTTTATCCTCCGCCTGGCCTACCG
Seq A exon
ATCTAAGCCCGGTGAGGGGAAGCTCATCTTCTGCTCAGGCCTGGTGCTACACCGGCTGCAGTGTGCCCGCGGCTTTGGTGACTGGATAGACAACATTCTAGCCTTCTCACGGTCCCTGCACAGCTTGGGTGTTGATGTTCCTGCCTTTGCCTGCCTGTCTGCTCTGGTCCTCATCACTG
Seq C2 exon
ATCGACATGGCCTCCAGGACCCTCGGCGGGTGGAGGAGCTGCAGAACCGCATTGCTAGCTGTCTGAAGGAACACATGGCCGCCGTGGCAGGAGACCCACAGCCGGCCAGCTGCCTGTCACGTCTGCTGGGCAAACTGCCTGAGCTCCGGACTCTGTGCACCCAAGGCCTACAGCGCATCTTTTGCCTCAAGCTGGAGGACTTGGTGCCCCCTCCACCTATCGTGGACAAGATCTTTATGGACACCTTGTCTTTCTGACCCTGCCCCGAACACGCGTGCACACTCACGTGCATGTTCTTCTTGTCACCCACGTGCCTTTAAGCCCATAGCCCACGGACCCCCAGACCACCCCACCCCCCAGCCTGTTTTTTGAGCTAAGACTGATGTATCTCCTCATTCCAGAAGATGGACAGAGAGAGAGAGAGAGCTCAAGACCTGGGGGGGAGGGTGTGTATTCACGGGGGTGACCCCACTATTTCTCTTATCCCTCCCAGCTCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007607-'16-10,'16-9,17-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(32.5=91.2)
A:
PF0010425=Hormone_recep=FE(31.4=100)
C2:
PF0010425=Hormone_recep=PD(35.6=79.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAAAGGAAGATGCCGGTG
R:
TTCAGACAGCTAGCAATGCGG
Band lengths:
245-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]