DreEX0051466 @ danRer10
Exon Skipping
Gene
ENSDARG00000039116 | nr5a5
Description
nuclear receptor subfamily 5, group A, member 5 [Source:ZFIN;Acc:ZDB-GENE-030131-4652]
Coordinates
chr3:53204498-53209669:-
Coord C1 exon
chr3:53209528-53209669
Coord A exon
chr3:53206714-53207453
Coord C2 exon
chr3:53204498-53204617
Length
740 bp
Sequences
Splice sites
3' ss Seq
TATGAAATCATGTGTCACAGCTG
3' ss Score
4.22
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GGCTTCTTTAAGCGCTCTGTGCAGAACAACAAGCGCTATACGTGTGCAGAGGCACAGAACTGCCCCATGGACCTGGCACAGAGGAAACGATGCCCTTACTGCCGCTTCCAGAAATGTGTAGCTGTCGGCATGAAGAAAGAAG
Seq A exon
CTGTTCGTGCAGACAGGATGAGAGGTGGCAGAAACAAGTTTGGACCTTTATACCGACGGGACAGGCAACTGAAACAGCAAAGAGGGACCTATCACCAGGCAAACATTGCCCCATACAGAGTCAAAATTGAGGGACCACAACAATTGGTGCCTGCTTTGCCTCATGATTTTCACGTCATCAACCCTAACCCTGCTTCTCTTGGCACTGACCATTACCACCCAACCCAGCACTTCCACCCTAATATGAGCCAGTCTGAATTTCCAGTGCTGCTGGACTGCACCATGCCCAGAGACCGAACATTTTCAGATCCATCCCTACCTATTCACACAGTGTGCTATCCAGGCATCCACGGATACCCTCCAGACAAAAGAGAGATCCCTTTCAACTACAACCCTGCTTCTGTGACGCCTCCTGGTCCAATGTCTCCTACAGTTCTCTCCACACCTGCACCTACTCTCACGCCAGCCTCAACTCCGAGTTCCACCCCAACTCCATCACAGAGCTTGACCCCCACCTCAACCACAGCCCCAAGTTCCTTTTTCTTAAACCAGCTCCTGCAAGCCGAGCCAGATGAGAAGCAACTCTGCATGCGGGTGTTAGCAAGCCTCCAGAGAGAACAAGCCTGCAGAGGAAAACATGACCGCCTCAACACCTTCAGCATCATGTGCAAAATGGCTGACCAGACTTTGTTCGGATTGGTGGAGTGGGCAAGGAACTGTGAATTATTTAAGGAGCTTAAG
Seq C2 exon
GTGGATGATCAAATGGTGTTACTGCAGAGCTGCTGGAGTGAGCTTCTTGTCCTGGATCACTTGTGCAGGCAAGTGGCTTATGGGAGAGATGGCAGCATCTGTCTGATTACAGGACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039116-'2-5,'2-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.495 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(64.3=93.8)
A:
PF0010425=Hormone_recep=PU(21.7=18.2)
C2:
PF0010425=Hormone_recep=FE(18.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAGCGCTCTGTGCAGAACA
R:
TGTAATCAGACAGATGCTGCCA
Band lengths:
246-986
Functional annotations
There are 1 annotated functions for this event
PMID: 19995909
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, gal4 vp16 complementation, mutation analysis. ELM ID: ELMI002003; ELM sequence: PYASPP; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]