DreEX0052673 @ danRer10
Exon Skipping
Gene
ENSDARG00000101161 | orc4
Description
origin recognition complex, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2224]
Coordinates
chr6:900738-902500:-
Coord C1 exon
chr6:902415-902500
Coord A exon
chr6:902004-902052
Coord C2 exon
chr6:900738-900889
Length
49 bp
Sequences
Splice sites
3' ss Seq
ATGGTTTTTTTGTGTTTCAGGGC
3' ss Score
11.03
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
GTCTTCTGCAGACGGATGATAAAATTGCTCTGAAAGAAATCACGCGGCAGCTGCATCTGGAGAACGTCGTAGGAGACAAAGTGTTT
Seq A exon
GGCAGTTTTGCGGAAAATCTGGCTTTTCTTTTGGAGGCTCTCAAGAAAG
Seq C2 exon
GTGATAAGAGCAGTAGTCGTCCTGTGCTCTTCTTGCTGGATGAGTTTGATCTGTTTGCTCATCATAAGAACCAGACGCTGCTCTACAATCTGCTGGACGTTTCTCAGTCTGCGCAGACGCCTGTGGCTGTGGTCGGACTCACCTGCAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101161-'10-10,'10-8,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(23.5=100),PF137641=E3_UbLigase_R4=FE(38.9=100)
A:
PF131911=AAA_16=FE(13.4=100),PF137641=E3_UbLigase_R4=FE(22.2=100)
C2:
PF131911=AAA_16=PD(28.4=86.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAAGAAATCACGCGGCA
R:
TGTAGAGCAGCGTCTGGTTCT
Band lengths:
145-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]