GgaEX1041341 @ galGal3
Exon Skipping
Gene
ENSGALG00000012448 | ORC4
Description
NA
Coordinates
chr7:36193405-36195871:-
Coord C1 exon
chr7:36195786-36195871
Coord A exon
chr7:36194057-36194105
Coord C2 exon
chr7:36193405-36193556
Length
49 bp
Sequences
Splice sites
3' ss Seq
AACTTTTCTCCTCTGTACAGGGC
3' ss Score
9.15
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGCTTTTGCAGACAAACGATAAAGTGGCCTTGAAGGAGATCACCAGGCAGTTGCACCTGGAAAATGTCGTTGGGGATAAAGTTTTT
Seq A exon
GGCAGTTTTGCAGAAAATCTTGCGTTCCTTCTTGAAGCTTTAAGGAAAG
Seq C2 exon
GAGACAGAACCAGCAGCTGCCCAGTCCTGTTTGTGCTGGATGAGTTTGACTTGTTTGTGCATCACAAGAATCAGACGCTGCTGTACAACCTGTTTGATGTATCCCAGTCAGCACAGACTCCAGTAACCGTTATTGGACTCACATGCAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012448-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(18.1=100)
A:
PF131911=AAA_16=FE(10.3=100)
C2:
PF131911=AAA_16=PD(28.4=86.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAGTTGCACCTGGAAAAT
R:
AACAGGTTGTACAGCAGCGTC
Band lengths:
136-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]