MmuEX6101122 @ mm10
Exon Skipping
Gene
ENSMUSG00000026761 | Orc4
Description
origin recognition complex, subunit 4 [Source:MGI Symbol;Acc:MGI:1347043]
Coordinates
chr2:48927096-48933165:-
Coord C1 exon
chr2:48933080-48933165
Coord A exon
chr2:48929681-48929729
Coord C2 exon
chr2:48927096-48927247
Length
49 bp
Sequences
Splice sites
3' ss Seq
TATCTATTTTTATTGTGCAGGGA
3' ss Score
8.87
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GACTCCTGCAGACAAATGAAAAAATTGCTCTGAAAGAGATCACAAGACAATTAAATCTAGACAATGTAGTTGAAGATAAAGTTTTT
Seq A exon
GGAAGCTTTGCTGAAAACCTTTCATTTCTTCTGGAAGCTTTGCAAAAAG
Seq C2 exon
GTGACCGGACTAGCAGTTGCCCAGTGATCTTCATACTGGATGAATTTGATATTTTTGCTCATCAGAAAAATCAAACACTCCTTTATAATCTTTTTGACATTTCTCAATCTGCACAGACACCAGTAGCAGTTATTGGACTTACATGTAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026761-'18-21,'18-18,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(18.2=100)
A:
PF131911=AAA_16=FE(10.4=100)
C2:
PF131911=AAA_16=PD(28.6=86.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCTGCAGACAAATGAAAA
R:
TGAGCAAAAATATCAAATTCATCCAG
Band lengths:
147-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types