RnoEX0062393 @ rn6
Exon Skipping
Gene
ENSRNOG00000005021 | Orc4
Description
origin recognition complex, subunit 4 [Source:RGD Symbol;Acc:735212]
Coordinates
chr3:33053496-33058544:-
Coord C1 exon
chr3:33058459-33058544
Coord A exon
chr3:33055464-33055512
Coord C2 exon
chr3:33053496-33053647
Length
49 bp
Sequences
Splice sites
3' ss Seq
CTTGTCTTTTTATTACACAGGGA
3' ss Score
9.39
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GACTGCTACAGACAAATGATAAAATTGCTCTGAAAGAGATCACAAGACAATTAAATCTAGAAAATGTAGTTGGAGATAAAGTTTTT
Seq A exon
GGAAGCTTTGCTGAAAACCTTTCGTTTCTTCTGGAAGCTTTGCAGAAAG
Seq C2 exon
GTAACCGGACTAGCAGTTGCCCAGTGATCTTCATACTGGATGAATTTGATCTTTTTGCTCATCAGAAAAACCAAACACTCCTTTATAATCTTTTTGACATTTCTCAATCTGCACAGACACCAATAGCAGTTATTGGCCTTACATGTAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005021_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(18.1=100)
A:
PF131911=AAA_16=FE(10.3=100)
C2:
PF131911=AAA_16=PD(28.4=86.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACAGACAAATGATAAAATTGCT
R:
TGAGCAAAAAGATCAAATTCATCCA
Band lengths:
144-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]