DreEX0052677 @ danRer10
Exon Skipping
Gene
ENSDARG00000101161 | orc4
Description
origin recognition complex, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2224]
Coordinates
chr6:896045-900612:-
Coord C1 exon
chr6:900439-900612
Coord A exon
chr6:898321-898407
Coord C2 exon
chr6:896045-896153
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTTGTTCTCTGTGTTTCTAGAAA
3' ss Score
9.5
5' ss Seq
CTGGTACGC
5' ss Score
8.06
Exon sequences
Seq C1 exon
GATGTGCTGGAGCTGCTGGAGAAGCGGGTGAAGTCTCGATTCTCTCACAGACAGATTCATCTCTTCAGTTCTCTCTCCTTCAGTCAGTATGTGGATGTGGTTCGACTGCAGCTCAGTTTGCCTCAGGATTTCCCAGATCACAGGTTCTCCAGCCAGTGGAACCAGAGCGTCACG
Seq A exon
AAACTGTGTGAAGATAAATCCGTTCTGGAGGTTTTAAAGAGAAGCTTCAACTCCAGTAAAGATTTCCGCTCTCTGTATTCGCTGCTG
Seq C2 exon
TTTATGGCTGTGAGTCGTGTGTCCGTCTCTCACTCTACTCTGTGTGAAGCTGATTTTCTTGAGTCCGGCCGCCTGATTTCTGCCGATTCCAAAGCAAACGTCCTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101161_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146291=ORC4_C=PU(14.1=46.6)
A:
PF146291=ORC4_C=FE(14.6=100)
C2:
PF146291=ORC4_C=FE(18.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGATGTGGTTCGACTGC
R:
TGGAATCGGCAGAAATCAGGC
Band lengths:
177-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]