GgaEX6043209 @ galGal4
Exon Skipping
Gene
ENSGALG00000012448 | ORC4
Description
origin recognition complex, subunit 4 [Source:HGNC Symbol;Acc:HGNC:8490]
Coordinates
chr7:34061909-34064210:-
Coord C1 exon
chr7:34064037-34064210
Coord A exon
chr7:34063650-34063736
Coord C2 exon
chr7:34061909-34062017
Length
87 bp
Sequences
Splice sites
3' ss Seq
AATACCACTTTTTTTTGTAGCTT
3' ss Score
6.85
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GATATTTTGGAGCTCTTGGAGAAGAGAGTGAAGTCGAGGTTCTCTCACCGACGGATCTATTTGATGAATTCCTTTGCTTTTAAGCAGTACATTAGGATATTCAAGGAGCAGCTTTCTCTTCCTGCTGAATTTCCTGACAAGGCTTTTGCACAGAAATGGAATAGCAACATTCAG
Seq A exon
CTTCTCACAGAAGACAAAACCGTGCAAGACATACTGCAGAACCTCTTTCACTACAGCAAAGATCTGCGTTCACTCAATTTCCTGCTG
Seq C2 exon
ATGCTTGCTGTAAGTAATGTTACTGTTCGTCACCCTCTTATCACCGCATCAGATCTTCAGGAGGCAAGCAAGCAGTACAGGATGGACTCAAAAGCAAATATTGTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012448-'16-22,'16-19,18-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.220 C2=0.000
Domain overlap (PFAM):
C1:
PF146291=ORC4_C=PU(14.1=46.6)
A:
PF146291=ORC4_C=FE(14.6=100)
C2:
PF146291=ORC4_C=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCTCTCACCGACGGATCT
R:
CGGTGATAAGAGGGTGACGAAC
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]