HsaEX6015828 @ hg38
Exon Skipping
Gene
ENSG00000115947 | ORC4
Description
origin recognition complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:8490]
Coordinates
chr2:147939140-147948224:-
Coord C1 exon
chr2:147948051-147948224
Coord A exon
chr2:147943436-147943522
Coord C2 exon
chr2:147939140-147939248
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTCCTTTTAGTAT
3' ss Score
11.14
5' ss Seq
TTGGTTTGT
5' ss Score
1.94
Exon sequences
Seq C1 exon
GATATTTTGGAACTCTTAGAAAAAAGAGTGAAGTCAAGATTTTCTCACCGGCAGATACACTTAATGAATTCATTTGGTTTTCCACAGTATGTTAAAATATTTAAAGAACAGTTATCTCTACCTGCAGAGTTTCCAGACAAGGTTTTTGCTGAGAAGTGGAATGAAAATGTTCAG
Seq A exon
TATCTCTCAGAAGATAGAAGTGTGCAAGAAGTACTACAGAAGCATTTCAATATCAGCAAAAACCTGCGGTCATTACACATGCTATTG
Seq C2 exon
ATGCTTGCTTTAAATCGAGTAACAGCATCGCACCCATTTATGACTGCCGTAGATCTAATGGAAGCAAGCCAACTGTGTAGCATGGACTCGAAAGCAAATATTGTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115947_MULTIEX1-7/7=6-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000424=AAA=PD(16.7=32.8),PF146291=ORC4_C=PU(14.1=46.6)
A:
PF146291=ORC4_C=FE(14.6=100)
C2:
PF146291=ORC4_C=FE(18.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCACCGGCAGATACACTT
R:
GGCAGTCATAAATGGGTGCGA
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains