MmuEX0033157 @ mm9
Exon Skipping
Gene
ENSMUSG00000026761 | Orc4
Description
origin recognition complex, subunit 4 [Source:MGI Symbol;Acc:MGI:1347043]
Coordinates
chr2:48765706-48772858:-
Coord C1 exon
chr2:48772685-48772858
Coord A exon
chr2:48768082-48768168
Coord C2 exon
chr2:48765706-48765814
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTTTTTGTTTTTTAGTGT
3' ss Score
10.5
5' ss Seq
TTGGTTTGT
5' ss Score
1.94
Exon sequences
Seq C1 exon
GATATTTTGGAACTCTTAGAAAAGAGAGTGAAGTCACGATTTTCTCACCGGCAGATACATTTAATGAATTCATTTGATTTTCCACAATATTTGAAAATATTTAAAGAACAGTTATCTCTACCTGCAGAATTCCCAGATAAGGCTTTTGCTGAGAGATGGAATGAGAATGTTCAC
Seq A exon
TGTCTCTCTGAAGATTCAACTGTGCTTGAAGTCCTACAGAAACATTTCAGTGTCAACAAAAACTTGCAGTCATTACACATGCTATTG
Seq C2 exon
ATGCTTGCTTTAAATCGAGTAACCGTATCACACCCATTTATGACTTCAGCAGATCTGATGGAGGCACAGCATATGTGTAGCTTGGATTCTAAGGCGAATATTGTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026761-'23-24,'23-21,24-24
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146291=ORC4_C=PU(14.1=46.6)
A:
PF146291=ORC4_C=FE(14.6=100)
C2:
PF146291=ORC4_C=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCACGATTTTCTCACCGGC
R:
TGGGTGTGATACGGTTACTCGA
Band lengths:
179-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: