DreEX0052757 @ danRer10
Exon Skipping
Gene
ENSDARG00000033251 | osbpl3a
Description
oxysterol binding protein-like 3a [Source:ZFIN;Acc:ZDB-GENE-040912-77]
Coordinates
chr19:20429689-20434674:+
Coord C1 exon
chr19:20429689-20429839
Coord A exon
chr19:20434383-20434468
Coord C2 exon
chr19:20434543-20434674
Length
86 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTTTTTTCTGCTAGTTC
3' ss Score
9.19
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
AATCCTGATGCTCCATCTTCTCGTCTACATGTGTCCCATCCTAACTTGGTATATTCAGAACCCGTTTCACCAGACTCATGCCTGGAGAGTCCAGACTCACCCACGGAAGCCTCTCGAATGCAGGAGGAGTTCTGTCGGCTTGCTGGCACTG
Seq A exon
TTCATTCCACTCTTCGGTCAGCGTACTCTTTACTTTGCTCCGAGAGAGACAGAGTCAAGAACACACTGGATTTTATCAGTGAGAAG
Seq C2 exon
GACGTCTTTGATGGGTCACGGCCTTTGCTGCAGCAAATGTCTAGTGAGAGCCGAGGGTCAATCCCAGAATCCATGTCAGAGTTCTTTGATGCTAAAGAGTACCTGCTGTCTGGCAGCTCATCTGATAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033251-'18-17,'18-16,19-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.745 A=0.000 C2=0.386
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGATGCTCCATCTTCTCGT
R:
AAAGGCCGTGACCCATCAAAG
Band lengths:
175-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]