GgaEX1041409 @ galGal3
Exon Skipping
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31596633-31604172:-
Coord C1 exon
chr2:31604016-31604172
Coord A exon
chr2:31601722-31601852
Coord C2 exon
chr2:31596633-31596740
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTTTACAAAATGGTTCTAGTTT
3' ss Score
3.39
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
GTGCCTTCAGTGTTTTCTGCCCCTATGAGACTACATGCTTCCAATCCTAACTTATCTACAATAGATTTTGTAGAAGAGAAAAACTACTCTGATGGCTCTGAAACATCATCAGAATTTACTAAAATGCAGGAGGACTTAGTTCATATTGCACATAAAG
Seq A exon
TTTACTTCACCTTGAAGTCAGCTTTCAGCAGTATATCTACAGAGAGAGAAAAGCTGAAGCAGATGCTGGAGCATGAGGCATCATCATCTCCATCTGCACAAATAGTTGGCTTGAAGAATGCCTTAACATCC
Seq C2 exon
GCAATAGCACAAAACACAGATCTAAAAGACCGGTTACGCAGAATACATGCCGAATCTATGATCCTTGATTCAGCATCTAATGCAAAATCAAGTCCAGATTTGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007-'12-21,'12-20,14-21=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.205 C2=0.354
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAGTGTTTTCTGCCCCT
R:
ACCAAATCTGGACTTGATTTTGCA
Band lengths:
258-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]