RnoEX6013588 @ rn6
Exon Skipping
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80068511-80080287:-
Coord C1 exon
chr4:80080131-80080287
Coord A exon
chr4:80071686-80071816
Coord C2 exon
chr4:80068511-80068618
Length
131 bp
Sequences
Splice sites
3' ss Seq
TAATGATTATATCTTCATAGTTT
3' ss Score
4.22
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
GTCCCTAAACCTTTTTCTGGCCCGGTGAGACTGCACTCCTCCAATCCTAACTTGTCAACACTGGACTTTGGAGAAGAGAAGTCTTACTCGGATGGTTCTGAAGCCTCGTCGGAGTTCTCCAAGATGCAGGAGGACCTGTGCCATGTCGCCCATAAAG
Seq A exon
TTTACTTCGCTTTAAGGTCAGCTTTCAATAGCATATCGATGGAGAGAGAGAAGTTGAAGCAGCTGATGGAACTGGACACCTCCTCCTCCCCTTCTGCTCAGGTCGTCGGTCTGAAGCATGCCCTGTCATCC
Seq C2 exon
GCCCTAGCACAAAACACAGATCTTAAAGAACGTTTACGCAGAATCCATGCAGAGTCTCTGCTCCTCGACCCGCCTGCTGGTCCCAAACCGGGGGACAACCTGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011-'15-26,'15-23,17-26=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.377 A=0.227 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTTCTGGCCCGGTGAGAC
R:
CAGGTTGTCCCCCGGTTTG
Band lengths:
249-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]