RnoEX0062508 @ rn6
Exon Skipping
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80061533-80071816:-
Coord C1 exon
chr4:80071686-80071816
Coord A exon
chr4:80068511-80068618
Coord C2 exon
chr4:80061533-80061667
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTAACATATTCCAGGCC
3' ss Score
8.15
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
TTTACTTCGCTTTAAGGTCAGCTTTCAATAGCATATCGATGGAGAGAGAGAAGTTGAAGCAGCTGATGGAACTGGACACCTCCTCCTCCCCTTCTGCTCAGGTCGTCGGTCTGAAGCATGCCCTGTCATCC
Seq A exon
GCCCTAGCACAAAACACAGATCTTAAAGAACGTTTACGCAGAATCCATGCAGAGTCTCTGCTCCTCGACCCGCCTGCTGGTCCCAAACCGGGGGACAACCTGGCAGAG
Seq C2 exon
GAAATCTCCAGGGATGAAAGCCGAGCCCTGGTACACCAGCTCTCCAACGAGAGCAGGCTGTCCATCACCGACTCCCTTTCTGAGTTTTTCGATGCCCAGGAAGTTCTGCTATCTCCTAGCTCTTCAGAAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=0.500 C2=0.422
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCGCTTTAAGGTCAGCTTTCA
R:
AGATAGCAGAACTTCCTGGGCA
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]