RnoEX6013589 @ rn6
Exon Skipping
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80060343-80068618:-
Coord C1 exon
chr4:80068511-80068618
Coord A exon
chr4:80061533-80061667
Coord C2 exon
chr4:80060343-80060436
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTGCTCTTTCCTAGGAA
3' ss Score
10.77
5' ss Seq
GAGGTTTGA
5' ss Score
3.11
Exon sequences
Seq C1 exon
GCCCTAGCACAAAACACAGATCTTAAAGAACGTTTACGCAGAATCCATGCAGAGTCTCTGCTCCTCGACCCGCCTGCTGGTCCCAAACCGGGGGACAACCTGGCAGAG
Seq A exon
GAAATCTCCAGGGATGAAAGCCGAGCCCTGGTACACCAGCTCTCCAACGAGAGCAGGCTGTCCATCACCGACTCCCTTTCTGAGTTTTTCGATGCCCAGGAAGTTCTGCTATCTCCTAGCTCTTCAGAAAACGAG
Seq C2 exon
ATCTCTGATGATGATTCATACGTCAGTGACATAAGTGATAATCTGTCCTTAGACAACCTCAGTAACGATTTAGACAATGAAAGACAGACCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011-'18-29,'18-28,21-29=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.422 C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTAGCACAAAACACAGATCT
R:
CCAAGGTCTGTCTTTCATTGTCT
Band lengths:
202-337
Functional annotations
There are 1 annotated functions for this event
PMID: 17804640
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: classical fluorescence spectroscopy, confocal microscopy, cross linking study, detection by mass spectrometry, green fluorescent protein tag. ELM ID: ELMI001270; ELM sequence: DSLSEFFDAQE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]