BtaEX6027822 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71440509-71452036:+
Coord C1 exon
chr4:71440509-71440616
Coord A exon
chr4:71448957-71449091
Coord C2 exon
chr4:71451943-71452036
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGGTTTTGTGTTTCCAACAGGAA
3' ss Score
11.18
5' ss Seq
GAGGTACGA
5' ss Score
8.65
Exon sequences
Seq C1 exon
GCCCTAGCACAAAACACAGATCTTAAAGAACGCTTATGCAGAATCCATGCCGAGTCTCTGCTCCTCGACCTCCCTGCTGCTGCCAAGTCGGGTGACGGTCTGGCAGAG
Seq A exon
GAAAACTCCAGAGATGATAGTCGGGCTCTGGTCCATCAGCTTTCCAATGAAAGCAGACTGTCCATCACTGACTCTCTCTCAGAGTTTTTTGATGCCCAGGAAGTTCTGTTGTCTCCAAGCTCTTCAGAAAATGAG
Seq C2 exon
ATTTCTGAAGATGATTCATATGTCAGTGACATAAGTGACAACTTTTCCTTAGACAATCTCAGTAATGATCTGGATAATGAGAGACAGACTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342-'14-23,'14-22,15-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.356 C2=0.396
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTAGCACAAAACACAGATCT
R:
CCAAAGTCTGTCTCTCATTATCCAGA
Band lengths:
202-337
Functional annotations
There are 1 annotated functions for this event
PMID: 17804640
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: classical fluorescence spectroscopy, confocal microscopy, cross linking study, detection by mass spectrometry, green fluorescent protein tag. ELM ID: ELMI001270; ELM sequence: DSLSEFFDAQE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]