BtaEX0025478 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71437181-71449091:+
Coord C1 exon
chr4:71437181-71437311
Coord A exon
chr4:71440509-71440616
Coord C2 exon
chr4:71448957-71449091
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTATTTTTAACGTGTTCCAGGCC
3' ss Score
7.72
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
TCTACTTCACTTTAAGGTCAGCTTTTAATACCATATCAACGGAGAGAGAGAAACTGAAGCAACTGATGGAGCAAGATGTTTCTGCCTCCCCCTCTGCCCAGGTCCTTGGTCTGAAGCATGCTCTGTCATCC
Seq A exon
GCCCTAGCACAAAACACAGATCTTAAAGAACGCTTATGCAGAATCCATGCCGAGTCTCTGCTCCTCGACCTCCCTGCTGCTGCCAAGTCGGGTGACGGTCTGGCAGAG
Seq C2 exon
GAAAACTCCAGAGATGATAGTCGGGCTCTGGTCCATCAGCTTTCCAATGAAAGCAGACTGTCCATCACTGACTCTCTCTCAGAGTTTTTTGATGCCCAGGAAGTTCTGTTGTCTCCAAGCTCTTCAGAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.167 C2=0.356
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACTTCACTTTAAGGTCAGCTT
R:
GACAACAGAACTTCCTGGGCA
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development