GgaEX0016508 @ galGal4
Exon Skipping
Gene
ENSGALG00000011007 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr2:31796891-31804979:-
Coord C1 exon
chr2:31804849-31804979
Coord A exon
chr2:31799760-31799867
Coord C2 exon
chr2:31796891-31797025
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTTAAATATTCCAGGCA
3' ss Score
6.28
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
TTTACTTCACCTTGAAGTCAGCTTTCAGCAGTATATCTACAGAGAGAGAAAAGCTGAAGCAGATGCTGGAGCATGAGGCATCATCATCTCCATCTGCACAAATAGTTGGCTTGAAGAATGCCTTAACATCC
Seq A exon
GCAATAGCACAAAACACAGATCTAAAAGACCGGTTACGCAGAATACATGCCGAATCTATGATCCTTGATTCAGCATCTAATGCAAAATCAAGTCCAGATTTGGTGAAG
Seq C2 exon
GAAAATTCAAGAGAAGAAAACAGAGGTCTGGTTCACCAGATCTCCAATGAAAGCAGACTGTCTATTGCTGACTCTCTCACAGAATTTTTTGATGCACAGGAAGTCCTACTGTCTGCTAGCTCTTCAGAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=0.333 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000017923fB1933
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTGAAGTCAGCTTTCAGC
R:
GCTAGCAGACAGTAGGACTTCC
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]