GgaEX0016508 @ galGal3
Exon Skipping
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31593764-31601852:-
Coord C1 exon
chr2:31601722-31601852
Coord A exon
chr2:31596633-31596740
Coord C2 exon
chr2:31593764-31593898
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTTAAATATTCCAGGCA
3' ss Score
6.28
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
TTTACTTCACCTTGAAGTCAGCTTTCAGCAGTATATCTACAGAGAGAGAAAAGCTGAAGCAGATGCTGGAGCATGAGGCATCATCATCTCCATCTGCACAAATAGTTGGCTTGAAGAATGCCTTAACATCC
Seq A exon
GCAATAGCACAAAACACAGATCTAAAAGACCGGTTACGCAGAATACATGCCGAATCTATGATCCTTGATTCAGCATCTAATGCAAAATCAAGTCCAGATTTGGTGAAG
Seq C2 exon
GAAAATTCAAGAGAAGAAAACAGAGGTCTGGTTCACCAGATCTCCAATGAAAGCAGACTGTCTATTGCTGACTCTCTCACAGAATTTTTTGATGCACAGGAAGTCCTACTGTCTGCTAGCTCTTCAGAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007-'14-22,'14-21,15-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.354 C2=0.367
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTGAAGTCAGCTTTCAGC
R:
GCTAGCAGACAGTAGGACTTCC
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]