DreEX6040572 @ danRer10
Exon Skipping
Gene
ENSDARG00000040482 | osbpl3b
Description
oxysterol binding protein-like 3b [Source:ZFIN;Acc:ZDB-GENE-090109-1]
Coordinates
chr16:21539603-21548263:+
Coord C1 exon
chr16:21539603-21539762
Coord A exon
chr16:21543707-21543837
Coord C2 exon
chr16:21548156-21548263
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTACATGTTTTTGCTTCCAGTTC
3' ss Score
9.08
5' ss Seq
GCAGTACGA
5' ss Score
1.84
Exon sequences
Seq C1 exon
GTACCAAGCTGTATCTCGGCAGGCTCTGTACGTCTCCATGCATCCAATCCCAACCTCTCTTCAGTAGACCTGACCACTGAGAAGACCTATCATGAACCTCTGGACTCTCCTATAGACGTATCCAAACTGCAGGAAGACTTCTGCCGAGTCGCAAACAACC
Seq A exon
TTCATACAACCATGAAATCAGCGCTGTGTATGCTGACTACAGAGAAGGAGAGAGTTAAACAGATGCTGGAGCACGAGCCTTGTCCATCACCATCAGCTCAGCTCCTGGGACTAAAGAACGCTCTGACTGCA
Seq C2 exon
GCTGTAACGCAGAACGCTGAGCTGAGAGAGCGACTGTGCAAGATTCATGCAGAGTCGCACATCTCTGAGCCCACTGTGCATATAAACCTCAGCCCTGGCCCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040482-'12-13,'12-12,13-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=0.364 C2=0.417
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCTCGGCAGGCTCTGTACG
R:
GGGCCAGGGCTGAGGTTTATA
Band lengths:
250-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]