BtaEX6027823 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71424584-71440616:+
Coord C1 exon
chr4:71424584-71424740
Coord A exon
chr4:71437181-71437311
Coord C2 exon
chr4:71440509-71440616
Length
131 bp
Sequences
Splice sites
3' ss Seq
TAATGATTATATCTTTATAGTCT
3' ss Score
4.42
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
GTACCTAAGCCTTTTTCTGGCCCAATAAGACTGCATTCCTCCAATCCTAATTTGTCTACACTAGATTTTGGAGAAGAGAAAAATTATTCTGATGGCTCTGAAACCTCATCAGAGTTTTCTAAAATGCAAGAGGATCTGTGTCATATTGCCCATAAAG
Seq A exon
TCTACTTCACTTTAAGGTCAGCTTTTAATACCATATCAACGGAGAGAGAGAAACTGAAGCAACTGATGGAGCAAGATGTTTCTGCCTCCCCCTCTGCCCAGGTCCTTGGTCTGAAGCATGCTCTGTCATCC
Seq C2 exon
GCCCTAGCACAAAACACAGATCTTAAAGAACGCTTATGCAGAATCCATGCCGAGTCTCTGCTCCTCGACCTCCCTGCTGCTGCCAAGTCGGGTGACGGTCTGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342-'12-21,'12-18,13-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.459 A=0.205 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCCAATAAGACTGCATTCC
R:
CCAGACCGTCACCCGACTT
Band lengths:
243-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]